2001
2002
2003
2004
2005
In the Japanese version of Luigi's Mansion, Luigi whistles when entering the final room, where Mario is held captive. This was removed in all other versions since it would be uncharacteristically nonchalant for Luigi to whistle while Mario is pleading for help in front of him.
2006
2007
If you are in possession of any further information about the Super Mario Knife, please contact me so this post can be amended!
2008
Follow-up to the previous post: while it appears that the Super Mario Knife is indeed extremely rare, it has been confirmed that it was available for purchase in Japan. Below is a photo of the item. Thank you very much to readers @msoyu62k22 and @mamako0326 for the information!
2009
2010
2011
2012
Super Mario 64 contains unused code for throwing MIPS the rabbit, including a unique animation of him falling onto the floor and getting back up. In the finished version of the game, this was replaced by Mario carefully setting MIPS down instead of throwing him.
2013
In WarioWare, Inc.: Mega Microgames, there is a small chance for the third level of the "Right in the Eye" microgame to be unwinnable. The game can put the needle too low to be threaded. In the footage, Down is held the entire time; the hand will simply not go any lower.
2014
2015
2016
2017
In Paper Mario: The Thousand-Year Door, glitches can be used to let Flavio follow Mario for the entirety of the game. Scenes not originally intended to have Flavio then exhibit "Flavio omnipresence" whereby instead of physically entering the scene, he is already always there.
2018
In Super Mario Odyssey, there are two NPCs sitting on a bench in Bowser's Kingdom. With a precise jump, Mario can land in a spot not covered by either of their collision, allowing him to forcibly insert himself between them on the bench.
2019
2020
In Super Mario Bros. 2, the animation of launching in a rocket ship usually takes a few seconds. By dropping a POW Block immediately after launching, the rocket's speed will increase drastically.
2021
2023
In Super Mario 64, the floating boxes above the elevator in Hazy Maze Cave are at a precise height where, if the edges of the elevator are aligned with them, Mario can bypass them by briefly getting squished into the gap.
2024
2025
Development files for Super Mario Advance contain voice samples of Mario, Luigi, Peach and Toad laughing in unusual, possibly intentionally odd-sounding ways. It is unknown what these clips would have been used for.